cellcanvas / create_embedding_zarr_student / 0.0.5

Generate Embeddings with Student Model

Use a distilled student model to generate embeddings for a Zarr dataset.
Tags
templatejava
Citation
Kyle Harrington for CellCanvashttps://cellcanvas.org
Solution written by
Kyle Harrington
License of solution
MIT

Arguments

--zarrinput
Path to the input Zarr file. (default value: PARAMETER_VALUE)
--zarrembedding
Path for the output Zarr embedding file. (default value: PARAMETER_VALUE)
--slices
Slices for the region of interest, specified as a string, e.g., (slice(0,100), slice(0,100), slice(0,100)). (default value: PARAMETER_VALUE)

Usage instructions

Please follow this link for details on how to install and run this solution.