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About
kyle harrington's cold-storage album for cryoET
album solutions for processing/viz/ML of cryoET data
cryocanvas
/
create-cryocanvas-crop
/ 0.0.1
Compute TomoTwin Embedding and Store with Cropped MRC in Zarr
Computes TomoTwin embeddings for a specified crop of MRC data with edge padding and stores both the cropped data and embeddings in a Zarr file.
Tags
template
java
imagej2
scijava
scyjava
Solution written by
Kyle Harrington
License of solution
MIT
Arguments
--mrcfile
Path to the MRC file (default value: PARAMETER_VALUE)
--zarr_path
Path for the output Zarr file (default value: PARAMETER_VALUE)
--z_start
Start coordinate in Z dimension (default value: PARAMETER_VALUE)
--z_end
End coordinate in Z dimension (default value: PARAMETER_VALUE)
--y_start
Start coordinate in Y dimension (default value: PARAMETER_VALUE)
--y_end
End coordinate in Y dimension (default value: PARAMETER_VALUE)
--x_start
Start coordinate in X dimension (default value: PARAMETER_VALUE)
--x_end
End coordinate in X dimension (default value: PARAMETER_VALUE)
Usage instructions
Please follow
this link
for details on how to install and run this solution.