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kyle harrington's cold-storage album for cryoET
album solutions for processing/viz/ML of cryoET data
cryocanvas / embedding_df_to_zarr / 0.0.9

Convert a TomoTwin embedding DataFrame to Zarr Format

Converts a given DataFrame to a Zarr file format.
Tags
templatejavaimagej2
Solution written by
Kyle Harrington
License of solution
MIT

Arguments

--mrcfile
Path to the MRC file (default value: PARAMETER_VALUE)
--embeddingfile
Path to the embedding DataFrame file (default value: PARAMETER_VALUE)
--num_workers
Number of workers for processing the dataframe (default value: 1)
--zarr_path
Path for the Zarr file (default value: PARAMETER_VALUE)
--zarr_group
Name of the group in the Zarr file to store the data (default value: PARAMETER_VALUE)

Usage instructions

Please follow this link for details on how to install and run this solution.