Process Cropped Data with skimage Features

Processes a crop of the input MRC data and embeddings, computes skimage features, and writes to Zarr.

Arguments

--mrcfile

Path to the MRC file (default value: PARAMETER_VALUE)

--embeddingfile

Path to the embedding DataFrame file (default value: PARAMETER_VALUE)

--zarr_path

Path for the output Zarr file (default value: PARAMETER_VALUE)

--z_start

Start coordinate in Z dimension (default value: PARAMETER_VALUE)

--z_end

End coordinate in Z dimension (default value: PARAMETER_VALUE)

--y_start

Start coordinate in Y dimension (default value: PARAMETER_VALUE)

--y_end

End coordinate in Y dimension (default value: PARAMETER_VALUE)

--x_start

Start coordinate in X dimension (default value: PARAMETER_VALUE)

--x_end

End coordinate in X dimension (default value: PARAMETER_VALUE)

Please follow this link for details on how to install and run this solution.