Wagner, T., Merino, F., Stabrin, M., Moriya, T., Antoni, C., Apelbaum, A., Hagel, P., Sitsel, O., Raisch, T., Prumbaum, D. and Quentin, D., 2019. SPHIRE-crYOLO is a fast and accurate fully automated particle picker for cryo-EM. Communications biology, 2(1), p.218..https://cryolo.readthedocs.io/en/stable/index.html
Solution written by
Kyle Harrington
License of solution
MIT
Arguments
--config
Path to configuration file (.json). (default value: PARAMETER_VALUE)
--weights
Path to trained model (.h5 file). (default value: PARAMETER_VALUE)
--runfile
Path to runfile (.json) for model evaluation. (default value: PARAMETER_VALUE)
--output
Path to file where the results are written as .html. (default value: PARAMETER_VALUE)
--images
Path to folder with test images (ground truth). (default value: PARAMETER_VALUE)
--boxfiles
Path to folder with box files (ground truth). (default value: PARAMETER_VALUE)
--gpu
Specify which GPU should be used. (default value: PARAMETER_VALUE)
Usage instructions
Please follow this link for details on how to install and run this solution.
