tomotwin / generate-embedding / 0.0.4

Generate an embedding with TomoTwin for a mrc

TomoTwin on an example from the czii cryoet dataportal.

Tags

templatejavaimagej2scijava

Citation

Rice, G., Wagner, T., Stabrin, M. et al. TomoTwin: generalized 3D localization of macromolecules in cryo-electron tomograms with structural data mining. Nat Methods (2023). https://doi.org/10.1038/s41592-023-01878-z.https://tomotwin-cryoet.readthedocs.io/en/stable/index.html

Solution written by

Kyle Harrington

License of solution

MIT

Arguments

--mrcfile

Path to the MRC file (default value: PARAMETER_VALUE)

--embeddingfile

Path for the output embedding file (default value: PARAMETER_VALUE)

Usage instructions

Please follow this link for details on how to install and run this solution.